MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2916830062545831
cnr4.334370341628646
efc0.5949722752549861
fber74.21919250488281
fwhmavg3.89507
fwhmx3.72487
fwhmy4.21227
fwhmz3.74807
icvscsf0.19500925237424657
icvsgm0.4768534537621267
icvswm0.3281372938636268
inumed1.046762228012085
inurange0.3684720635414125
qi10.0
qi20.0005267087366391189
rpvecsf27.755968484221956
rpvegm12.878761196228476
rpvewm20.697192154424442
sizex180
sizey256
sizez256
snrcsf2.2083406042470894
snrgm10.4911872775184
snrtotal9.76669776880867
snrwm16.600565424660523
snrdcsf10.811105970612077
snrdgm23.652835814205964
snrdtotal24.11723872853891
snrdwm37.88777440079869
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.455133332710882
summarybgmad17.29183578491211
summarybgmean59.58869552612305
summarybgmedian57.554264068603516
summarybgn2890487.0
summarybgp0533.89585151672364
summarybgp9592.61598052978515
summarybgstdv18.55511474609375
summarycsfk1.4775179517516008
summarycsfmad128.6802978515625
summarycsfmean300.0755615234375
summarycsfmedian285.35107421875
summarycsfn10342.0
summarycsfp05117.98013877868654
summarycsfp95523.513037109375
summarycsfstdv129.2089080810547
summarygmk0.3565522313272873
summarygmmad56.835227966308594
summarygmmean626.299072265625
summarygmmedian624.2989501953125
summarygmn34707.0
summarygmp05532.217694091797
summarygmp95727.8934143066406
summarygmstdv59.50613021850586
summarywmk1.6625612812214934
summarywmmad52.756080627441406
summarywmmean999.5112915039062
summarywmmedian1000.01953125
summarywmn155508.0
summarywmp05899.0478088378907
summarywmp951094.6364013671875
summarywmstdv60.23989486694336
tpmoverlapcsf0.2029138207435608
tpmoverlapgm0.5355764627456665
tpmoverlapwm0.5373735427856445
wm2max0.6639964850528183

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5suma5c84040a39a90d074bf8b0e1bb3f081
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.