MRIQC: individual T1w report

Summary

Subject ID: 010_ControlPre.
Date and time: 2018-05-06, 23:58.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2916830062545831
cnr			4.334370341628646
efc			0.5949722752549861
fber			74.21919250488281
fwhm	avg		3.89507
fwhm	x		3.72487
fwhm	y		4.21227
fwhm	z		3.74807
icvs	csf		0.19500925237424657
icvs	gm		0.4768534537621267
icvs	wm		0.3281372938636268
inu	med		1.046762228012085
inu	range		0.3684720635414125
qi	1		0.0
qi	2		0.0005267087366391189
rpve	csf		27.755968484221956
rpve	gm		12.878761196228476
rpve	wm		20.697192154424442
size	x		180
size	y		256
size	z		256
snr	csf		2.2083406042470894
snr	gm		10.4911872775184
snr	total		9.76669776880867
snr	wm		16.600565424660523
snrd	csf		10.811105970612077
snrd	gm		23.652835814205964
snrd	total		24.11723872853891
snrd	wm		37.88777440079869
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.455133332710882
summary	bg	mad	17.29183578491211
summary	bg	mean	59.58869552612305
summary	bg	median	57.554264068603516
summary	bg	n	2890487.0
summary	bg	p05	33.89585151672364
summary	bg	p95	92.61598052978515
summary	bg	stdv	18.55511474609375
summary	csf	k	1.4775179517516008
summary	csf	mad	128.6802978515625
summary	csf	mean	300.0755615234375
summary	csf	median	285.35107421875
summary	csf	n	10342.0
summary	csf	p05	117.98013877868654
summary	csf	p95	523.513037109375
summary	csf	stdv	129.2089080810547
summary	gm	k	0.3565522313272873
summary	gm	mad	56.835227966308594
summary	gm	mean	626.299072265625
summary	gm	median	624.2989501953125
summary	gm	n	34707.0
summary	gm	p05	532.217694091797
summary	gm	p95	727.8934143066406
summary	gm	stdv	59.50613021850586
summary	wm	k	1.6625612812214934
summary	wm	mad	52.756080627441406
summary	wm	mean	999.5112915039062
summary	wm	median	1000.01953125
summary	wm	n	155508.0
summary	wm	p05	899.0478088378907
summary	wm	p95	1094.6364013671875
summary	wm	stdv	60.23989486694336
tpm	overlap	csf	0.2029138207435608
tpm	overlap	gm	0.5355764627456665
tpm	overlap	wm	0.5373735427856445
wm2max			0.6639964850528183

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	a5c84040a39a90d074bf8b0e1bb3f081
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.